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168
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BMCBI
2005
132views more  BMCBI 2005»
15 years 3 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
ICDE
2012
IEEE
267views Database» more  ICDE 2012»
13 years 5 months ago
Scalable and Numerically Stable Descriptive Statistics in SystemML
—With the exponential growth in the amount of data that is being generated in recent years, there is a pressing need for applying machine learning algorithms to large data sets. ...
Yuanyuan Tian, Shirish Tatikonda, Berthold Reinwal...
BIOINFORMATICS
2005
134views more  BIOINFORMATICS 2005»
15 years 3 months ago
Outcome signature genes in breast cancer: is there a unique set?
Motivation: direct bearing whose expres Sorlie et al., 2 gene sets is a diseases (Lossos et al., 2004; Miklos and Maleszka, 2004), and the variables that could account questions i...
Liat Ein-Dor, Itai Kela, Gad Getz, David Givol, Ey...
ICCAD
1992
IEEE
93views Hardware» more  ICCAD 1992»
15 years 7 months ago
Timing analysis in high-level synthesis
This paper presents a comprehensive timing model for behavioral-level specifications and algorithms for timing analysis in high-level synthesis. It is based on a timing network wh...
Andreas Kuehlmann, Reinaldo A. Bergamaschi
122
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BMCBI
2010
136views more  BMCBI 2010»
15 years 3 months ago
Bias correction and Bayesian analysis of aggregate counts in SAGE libraries
Background: Tag-based techniques, such as SAGE, are commonly used to sample the mRNA pool of an organism's transcriptome. Incomplete digestion during the tag formation proces...
Russell L. Zaretzki, Michael A. Gilchrist, William...