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BMCBI
2006
123views more  BMCBI 2006»
14 years 9 months ago
How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different result
Background: Short oligonucleotide arrays for transcript profiling have been available for several years. Generally, raw data from these arrays are analysed with the aid of the Mic...
Frank F. Millenaar, John Okyere, Sean T. May, Mart...
KDD
2009
ACM
229views Data Mining» more  KDD 2009»
15 years 10 months ago
An association analysis approach to biclustering
The discovery of biclusters, which denote groups of items that show coherent values across a subset of all the transactions in a data set, is an important type of analysis perform...
Gaurav Pandey, Gowtham Atluri, Michael Steinbach, ...
ISDA
2006
IEEE
15 years 3 months ago
Finding Groups in Data: Cluster Analysis with Ants
We present in this paper a modification of Lumer and Faieta’s algorithm for data clustering. This algorithm discovers automatically clusters in numerical data without prior kno...
Urszula Boryczka
BMCBI
2007
112views more  BMCBI 2007»
14 years 9 months ago
Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis
Background: Gene clustering has been widely used to group genes with similar expression pattern in microarray data analysis. Subsequent enrichment analysis using predefined gene s...
Tae-Min Kim, Yeun-Jun Chung, Mun-Gan Rhyu, Myeong ...
BMCBI
2005
114views more  BMCBI 2005»
14 years 9 months ago
Signal transduction pathway profiling of individual tumor samples
Background: Signal transduction pathways convey information from the outside of the cell to transcription factors, which in turn regulate gene expression. Our objective is to anal...
Thomas Breslin, Morten Krogh, Carsten Peterson, Ca...