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» Approximate Global Alignment of Sequences
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RECOMB
2006
Springer
16 years 2 months ago
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Sagi Snir, Lior Pachter
118
Voted
TCBB
2010
114views more  TCBB 2010»
15 years 8 days ago
Cache-Oblivious Dynamic Programming for Bioinformatics
— We present efficient cache-oblivious algorithms for some well-studied string problems in bioinformatics including the longest common subsequence, global pairwise sequence alig...
Rezaul Alam Chowdhury, Hai-son Le, Vijaya Ramachan...
GCB
2000
Springer
137views Biometrics» more  GCB 2000»
15 years 5 months ago
Detecting Sporadic Recombination in DNA Alignments with Hidden Markov Models
Conventional phylogenetic tree estimation methods assume that all sites in a DNA multiple alignment have the same evolutionary history. This assumption is violated in data sets fro...
Dirk Husmeier, Frank Wright
DASFAA
2005
IEEE
136views Database» more  DASFAA 2005»
15 years 7 months ago
Distributed Intersection Join of Complex Interval Sequences
In many different application areas, e.g. space observation systems or engineering systems of world-wide operating companies, there is a need for an efficient distributed intersect...
Hans-Peter Kriegel, Peter Kunath, Martin Pfeifle, ...
SDM
2003
SIAM
183views Data Mining» more  SDM 2003»
15 years 3 months ago
ApproxMAP: Approximate Mining of Consensus Sequential Patterns
Conventional sequential pattern mining methods may meet inherent difficulties in mining databases with long sequences and noise. They may generate a huge number of short and trivi...
Hye-Chung Kum, Jian Pei, Wei Wang 0010, Dean Dunca...