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» Approximate Global Alignment of Sequences
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83
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CSB
2003
IEEE
157views Bioinformatics» more  CSB 2003»
15 years 7 months ago
ANTICLUSTAL: Multiple Sequence Alignment by Antipole Clustering and Linear Approximate 1-Median Computation
Cinzia Di Pietro, V. Di Pietro, G. Emmanuele, Alfr...
133
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BMCBI
2010
106views more  BMCBI 2010»
15 years 2 months ago
Multiple structure alignment and consensus identification for proteins
Background: An algorithm is presented to compute a multiple structure alignment for a set of proteins and to generate a consensus (pseudo) protein which captures common substructu...
Ivaylo Ilinkin, Jieping Ye, Ravi Janardan
124
Voted
AINA
2006
IEEE
15 years 8 months ago
Partitioned optimization algorithms for multiple sequence alignment
Multiple sequence alignment is an important and difficult problem in molecular biology and bioinformatics. In this paper, we propose a partitioning approach that significantly impr...
Yixin Chen, Yi Pan, Juan Chen, Wei Liu, Ling Chen
122
Voted
BMCBI
2005
158views more  BMCBI 2005»
15 years 1 months ago
Automated generation of heuristics for biological sequence comparison
Background: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. ...
Guy St. C. Slater, Ewan Birney
121
Voted
BMCBI
2006
137views more  BMCBI 2006»
15 years 1 months ago
Sigma: multiple alignment of weakly-conserved non-coding DNA sequence
Background: Existing tools for multiple-sequence alignment focus on aligning protein sequence or protein-coding DNA sequence, and are often based on extensions to Needleman-Wunsch...
Rahul Siddharthan