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SIGMOD
2008
ACM
236views Database» more  SIGMOD 2008»
15 years 11 months ago
Approximate embedding-based subsequence matching of time series
A method for approximate subsequence matching is introduced, that significantly improves the efficiency of subsequence matching in large time series data sets under the dynamic ti...
Vassilis Athitsos, Panagiotis Papapetrou, Michalis...
BMCBI
2006
136views more  BMCBI 2006»
14 years 11 months ago
Java GUI for InterProScan (JIPS): A tool to help process multiple InterProScans and perform ortholog analysis
Background: Recent, rapid growth in the quantity of available genomic data has generated many protein sequences that are not yet biochemically classified. Thus, the prediction of ...
Aijazuddin Syed, Chris Upton
CVPR
2004
IEEE
16 years 1 months ago
Fast Contour Matching Using Approximate Earth Mover's Distance
Weighted graph matching is a good way to align a pair of shapes represented by a set of descriptive local features; the set of correspondences produced by the minimum cost matchin...
Kristen Grauman, Trevor Darrell
COCOON
2007
Springer
15 years 5 months ago
Seed-Based Exclusion Method for Non-coding RNA Gene Search
Given an RNA family characterized by conserved sequences and folding constraints, the problem is to search for all the instances of the RNA family in a genomic database. As seed-ba...
Jean-Eudes Duchesne, Mathieu Giraud, Nadia El-Mabr...
NAR
2008
122views more  NAR 2008»
14 years 11 months ago
PlantTFDB: a comprehensive plant transcription factor database
Transcription factors (TFs) play key roles in controlling gene expression. Systematic identification and annotation of TFs, followed by construction of TF databases may serve as u...
Anyuan Guo, Xin Chen, Ge Gao, He Zhang, Qihui Zhu,...