Sciweavers

154 search results - page 18 / 31
» Approximate String Matching: A Simpler Faster Algorithm
Sort
View
ICALP
2001
Springer
15 years 4 months ago
Permutation Editing and Matching via Embeddings
Abstract. If the genetic maps of two species are modelled as permutations of (homologous) genes, the number of chromosomal rearrangements in the form of deletions, block moves, inv...
Graham Cormode, S. Muthukrishnan, Süleyman Ce...
STRINGOLOGY
2004
15 years 1 months ago
BDD-Based Analysis of Gapped q-Gram Filters
Recently, there has been a surge of interest in gapped q-gram filters for approximate string matching. Important design parameters for filters are for example the value of q, the f...
Marc Fontaine, Stefan Burkhardt, Juha Kärkk&a...
FOCS
2008
IEEE
15 years 6 months ago
Submodular Approximation: Sampling-based Algorithms and Lower Bounds
We introduce several generalizations of classical computer science problems obtained by replacing simpler objective functions with general submodular functions. The new problems i...
Zoya Svitkina, Lisa Fleischer
WOB
2004
120views Bioinformatics» more  WOB 2004»
15 years 1 months ago
Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
ABSTRACT. Reconfigurable systolic arrays can be adapted to efficiently resolve a wide spectrum of computational problems; parallelism is naturally explored in systolic arrays and r...
Ricardo P. Jacobi, Mauricio Ayala-Rincón, L...
CSB
2004
IEEE
177views Bioinformatics» more  CSB 2004»
15 years 3 months ago
Compressed Pattern Matching in DNA Sequences
We propose derivative Boyer-Moore (d-BM), a new compressed pattern matching algorithm in DNA sequences. This algorithm is based on the BoyerMoore method, which is one of the most ...
Lei Chen, Shiyong Lu, Jeffrey L. Ram