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» Approximate String Matching: A Simpler Faster Algorithm
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BMCBI
2008
214views more  BMCBI 2008»
14 years 9 months ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
74
Voted
ISAAC
2001
Springer
98views Algorithms» more  ISAAC 2001»
15 years 1 months ago
Fragmentary Pattern Matching: Complexity, Algorithms and Applications for Analyzing Classic Literary Works
A fragmentary pattern is a multiset of non-empty strings, and it matches a string w if all the strings in it occur within w without any overlaps. We study some fundamental issues o...
Hideaki Hori, Shinichi Shimozono, Masayuki Takeda,...
CPM
1993
Springer
125views Combinatorics» more  CPM 1993»
15 years 1 months ago
Detecting False Matches in String Matching Algorithms
Consider a text string of length n, a pattern string of length m, and a match vector of length n which declares each location in the text to be either a mismatch (the pattern does ...
S. Muthukrishnan
73
Voted
SPIRE
2005
Springer
15 years 3 months ago
Restricted Transposition Invariant Approximate String Matching Under Edit Distance
Let A and B be strings with lengths m and n, respectively, over a finite integer alphabet. Two classic string mathing problems are computing the edit distance between A and B, and...
Heikki Hyyrö
ASAP
2004
IEEE
185views Hardware» more  ASAP 2004»
15 years 1 months ago
Families of FPGA-Based Algorithms for Approximate String Matching
Dynamic programming for approximate string matching is a large family of different algorithms, which vary significantly in purpose, complexity, and hardware utilization. Many impl...
Tom Van Court, Martin C. Herbordt