Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
A fragmentary pattern is a multiset of non-empty strings, and it matches a string w if all the strings in it occur within w without any overlaps. We study some fundamental issues o...
Hideaki Hori, Shinichi Shimozono, Masayuki Takeda,...
Consider a text string of length n, a pattern string of length m, and a match vector of length n which declares each location in the text to be either a mismatch (the pattern does ...
Let A and B be strings with lengths m and n, respectively, over a finite integer alphabet. Two classic string mathing problems are computing the edit distance between A and B, and...
Dynamic programming for approximate string matching is a large family of different algorithms, which vary significantly in purpose, complexity, and hardware utilization. Many impl...