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» Approximate String Matching in DNA Sequences
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BMCBI
2005
158views more  BMCBI 2005»
13 years 6 months ago
Automated generation of heuristics for biological sequence comparison
Background: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. ...
Guy St. C. Slater, Ewan Birney
STOC
2000
ACM
156views Algorithms» more  STOC 2000»
13 years 10 months ago
Near optimal multiple alignment within a band in polynomial time
Multiple sequence alignment is a fundamental problem in computational biology. Because of its notorious difficulties, aligning sequences within a constant band (c-diagonal) is a ...
Ming Li, Bin Ma, Lusheng Wang
DAWAK
2009
Springer
14 years 3 months ago
Recommending Multidimensional Queries.
Interactive analysis of datacube, in which a user navigates a cube by launching a sequence of queries is often tedious since the user may have no idea of what the forthcoming query...
Arnaud Giacometti, Elsa Negre, Patrick Marcel
IANDC
2008
141views more  IANDC 2008»
13 years 6 months ago
Graph connectivity, partial words, and a theorem of Fine and Wilf
The problem of computing periods in words, or finite sequences of symbols from a finite alphabet, has important applications in several areas including data compression, string se...
Francine Blanchet-Sadri, Deepak Bal, Gautam Sisodi...
CIKM
2008
Springer
13 years 8 months ago
TinyLex: static n-gram index pruning with perfect recall
Inverted indexes using sequences of characters (n-grams) as terms provide an error-resilient and language-independent way to query for arbitrary substrings and perform approximate...
Derrick Coetzee