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» Approximate String Matching in DNA Sequences
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CSB
2004
IEEE
177views Bioinformatics» more  CSB 2004»
13 years 10 months ago
Compressed Pattern Matching in DNA Sequences
We propose derivative Boyer-Moore (d-BM), a new compressed pattern matching algorithm in DNA sequences. This algorithm is based on the BoyerMoore method, which is one of the most ...
Lei Chen, Shiyong Lu, Jeffrey L. Ram
ISMB
1998
13 years 7 months ago
Compression of Strings with Approximate Repeats
We describe a model for strings of characters that is loosely based on the Lempel Ziv model with the addition that a repeated substring can be an approximate match to the original...
Lloyd Allison, Timothy Edgoose, Trevor I. Dix
IPPS
2002
IEEE
13 years 11 months ago
Approximate String Matching in LDAP Based on Edit Distance
As the E-Commerce rapidly grows up, searching data is almost necessary in every application. Approximate string matching problems play a very important role to search with errors....
Chi-Chien Pan, Kai-Hsiang Yang, Tzao-Lin Lee
CORR
2004
Springer
111views Education» more  CORR 2004»
13 years 6 months ago
Finding Approximate Palindromes in Strings Quickly and Simply
: Described are two algorithms to find long approximate palindromes in a string, for example a DNA sequence. A simple algorithm requires O(n)space and almost always runs in O(k.n)-...
L. Allison