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» Approximate Structural Consistency
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BMCBI
2005
116views more  BMCBI 2005»
15 years 4 months ago
SuperLigands - a database of ligand structures derived from the Protein Data Bank
Background: Currently, the PDB contains approximately 29,000 protein structures comprising over 70,000 experimentally determined three-dimensional structures of over 5,000 differe...
Elke Michalsky, Mathias Dunkel, Andrean Goede, Rob...
WABI
2005
Springer
120views Bioinformatics» more  WABI 2005»
15 years 10 months ago
Multiple Structural RNA Alignment with Lagrangian Relaxation
In contrast to proteins, many classes of functionally related RNA molecules show a rather weak sequence conservation but instead a fairly well conserved secondary structure. Hence ...
Markus Bauer, Gunnar W. Klau, Knut Reinert
165
Voted
JCB
2008
106views more  JCB 2008»
15 years 5 months ago
Statistics of Random Protein Superpositions: p-Values for Pairwise Structure Alignment
Quantification of statistical significance is essential for the interpretation of protein structural similarity. To address this, a random model for protein structure comparison w...
James O. Wrabl, Nick V. Grishin
145
Voted
MLMTA
2007
15 years 6 months ago
Prediction of Protein Secondary Structures with a Novel Kernel Density Estimator
- Though prediction of protein secondary structures has been an active research issue in bioinformatics for quite a few years and many approaches have been proposed, a new challeng...
Yen-Jen Oyang, Darby Tien-Hao Chang, Yu-Yen Ou, Ha...
KAIS
2000
87views more  KAIS 2000»
15 years 4 months ago
An Index Structure for Data Mining and Clustering
Abstract. In this paper we present an index structure, called MetricMap, that takes a set of objects and a distance metric and then maps those objects to a k-dimensional space in s...
Xiong Wang, Jason Tsong-Li Wang, King-Ip Lin, Denn...