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» Approximate matching of secondary structures
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BMCBI
2008
123views more  BMCBI 2008»
13 years 6 months ago
Shape based indexing for faster search of RNA family databases
Background: Most non-coding RNA families exert their function by means of a conserved, common secondary structure. The Rfam data base contains more than five hundred structurally ...
Stefan Janssen, Jens Reeder, Robert Giegerich
3DPVT
2002
IEEE
121views Visualization» more  3DPVT 2002»
13 years 11 months ago
Analysis of Secondary Structure Elements of Proteins Using Indexing Techniques
In this paper we present a method for protein structure comparison that is based on indexing. Unlike most methods using indexing, ours does not use invariants of the C atoms of th...
Concettina Guerra, Stefano Lonardi, Giuseppe Zanot...
CANDC
2006
ACM
13 years 6 months ago
An RNA folding algorithm including pseudoknots based on dynamic weighted matching
On the basis of maximum weighted matching (MWM) algorithm, we introduced a dynamic weight related with stem length and used a recursive algorithm to predict RNA secondary structur...
Haijun Liu, Dong Xu, Jianlin Shao, Yifei Wang
TCOM
2010
133views more  TCOM 2010»
13 years 4 months ago
Transmission control in cognitive radio as a Markovian dynamic game: Structural result on randomized threshold policies
Abstract——This paper considers an uplink time division multiple access (TDMA) cognitive radio network where multiple cognitive radios (secondary users) attempt to access a spect...
J. Huang, V. Krishnamurthy
IJBRA
2007
80views more  IJBRA 2007»
13 years 6 months ago
On predicting secondary structure transition
A function of a protein is dependent on its structure; therefore, predicting a protein structure from an amino acid sequence is an active area of research. Optimally predicting a ...
Raja Loganantharaj, Vivek Philip