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» Approximating max-min linear programs with local algorithms
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ICPP
2003
IEEE
15 years 3 months ago
FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment
Pairwise sequence alignment is a fundamental operation for homology search in bioinformatics. For two DNA or protein sequences of length ¢ and £ , full-matrix (FM), dynamic prog...
Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane S...
FOCS
2005
IEEE
15 years 3 months ago
Approximation Algorithms for Unique Games
We present a polynomial time algorithm based on semidefinite programming that, given a unique game of value 1 − O(1/ log n), satisfies a constant fraction of constraints, wher...
Luca Trevisan
CPM
2005
Springer
116views Combinatorics» more  CPM 2005»
15 years 3 months ago
Exact and Approximation Algorithms for DNA Tag Set Design
In this paper we propose new solution methods for designing tag sets for use in universal DNA arrays. First, we give integer linear programming formulations for two previous formal...
Ion I. Mandoiu, Dragos Trinca
MST
2010
187views more  MST 2010»
14 years 4 months ago
Distributed Approximation of Capacitated Dominating Sets
We study local, distributed algorithms for the capacitated minimum dominating set (CapMDS) problem, which arises in various distributed network applications. Given a network graph...
Fabian Kuhn, Thomas Moscibroda
FSTTCS
2004
Springer
15 years 3 months ago
Improved Approximation Algorithms for Maximum Graph Partitioning Problems
Abstract Abstract. In this paper we improve the analysis of approximation algorithms based on semidefinite programming for the maximum graph partitioning problems MAX-k-CUT, MAX-k...
Gerold Jäger, Anand Srivastav