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» Approximation Algorithms for k-hurdle Problems
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SIGIR
2009
ACM
15 years 11 months ago
Brute force and indexed approaches to pairwise document similarity comparisons with MapReduce
This paper explores the problem of computing pairwise similarity on document collections, focusing on the application of “more like this” queries in the life sciences domain. ...
Jimmy J. Lin
CVPR
2010
IEEE
16 years 1 months ago
Beyond Trees: MRF Inference via Outer-Planar Decomposition
Maximum a posteriori (MAP) inference in Markov Random Fields (MRFs) is an NP-hard problem, and thus research has focussed on either finding efficiently solvable subclasses (e.g. t...
Dhruv Batra, Andrew Gallagher, Devi Parikh, Tsuhan...
RECOMB
2006
Springer
16 years 5 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
162
Voted
JCC
2006
110views more  JCC 2006»
15 years 5 months ago
Using internal and collective variables in Monte Carlo simulations of nucleic acid structures: Chain breakage/closure algorithm
: This article describes a method for solving the geometric closure problem for simplified models of nucleic acid structures by using the constant bond lengths approximation. The r...
Heinz Sklenar, Daniel Wüstner, Remo Rohs
FOIKS
2004
Springer
15 years 10 months ago
Query Answering and Containment for Regular Path Queries under Distortions
Abstract. We give a general framework for approximate query processing in semistructured databases. We focus on regular path queries, which are the integral part of most of the que...
Gösta Grahne, Alex Thomo