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CCP
2011
92views more  CCP 2011»
13 years 11 months ago
Backwards Search in Context Bound Text Transformations
—The Burrows-Wheeler Transform (BWT) is the basis for many of the most effective compression and selfindexing methods used today. A key to the versatility of the BWT is the abili...
Matthias Petri, Gonzalo Navarro, J. Shane Culpeppe...
BMCBI
2010
178views more  BMCBI 2010»
14 years 11 months ago
CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics
Background: Recent studies have shown that copy number variations (CNVs) are frequent in higher eukaryotes and associated with a substantial portion of inherited and acquired risk...
Xiaowu Gai, Juan C. Perin, Kevin Murphy, Ryan O'Ha...
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BMCBI
2008
138views more  BMCBI 2008»
14 years 11 months ago
Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles
Background: The hierarchical clustering tree (HCT) with a dendrogram [1] and the singular value decomposition (SVD) with a dimension-reduced representative map [2] are popular met...
Yin-Jing Tien, Yun-Shien Lee, Han-Ming Wu, Chun-Ho...
BMCBI
2004
124views more  BMCBI 2004»
14 years 11 months ago
XHM: A system for detection of potential cross hybridizations in DNA microarrays
Background: Microarrays have emerged as the preferred platform for high throughput gene expression analysis. Cross-hybridization among genes with high sequence similarities can be...
Kristian Flikka, Fekadu Yadetie, Astrid Lægr...
BMCBI
2010
108views more  BMCBI 2010»
14 years 6 months ago
Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset
Background: Concomitant with the rise in the popularity of DNA microarrays has been a surge of proposed methods for the analysis of microarray data. Fully controlled "spike-i...
Qianqian Zhu, Jeffrey C. Miecznikowski, Marc S. Ha...