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» Assemblies as Graph Processes
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ISMB
1997
15 years 7 months ago
Automated Alignment of RNA Sequences to Pseudoknotted Structures
Seq7 is a newprogramfor generating multiple structure-based alignments of RNAsequences. Byusing a variant of Dijkstra’s algorithm to find the shortest path through a specially c...
Jack E. Tabaska, Gary D. Stormo
GECCO
2008
Springer
119views Optimization» more  GECCO 2008»
15 years 7 months ago
Evolutionary synthesis of low-sensitivity equalizers using adjacency matrix representation
An evolutionary synthesis method to design low-sensitivity IIR filters with linear phase in the passband is presented. The method uses a chromosome coding scheme based on the grap...
Leonardo Bruno de Sá, Antonio Carneiro Mesq...
CAL
2008
15 years 6 months ago
Pipelined Architecture for Multi-String Matching
We present a pipelined approach to hardware implementation of the Aho-Corasick (AC) algorithm for string matching called P-AC. By incorporating pipelined processing, the state grap...
Derek Chi-Wai Pao, Wei Lin, Bin Liu
CANDC
2006
ACM
15 years 6 months ago
Identification of functional modules in a PPI network by clique percolation clustering
Large-scale experiments and data integration have provided the opportunity to systematically analyze and comprehensively understand the topology of biological networks and biochem...
Shi-Hua Zhang, Xue-Mei Ning, Xiang-Sun Zhang
ENTCS
2002
108views more  ENTCS 2002»
15 years 6 months ago
Rewriting in the partial algebra of typed terms modulo AC
We study the partial algebra of typed terms with an associative commutative and idempotent operator (typed AC-terms). The originality lies in the representation of the typing poli...
Thomas Colcombet