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HIPC
2009
Springer
15 years 2 months ago
Comparing the performance of clusters, Hadoop, and Active Disks on microarray correlation computations
Abstract--Microarray-based comparative genomic hybridization (aCGH) offers an increasingly fine-grained method for detecting copy number variations in DNA. These copy number variat...
Jeffrey A. Delmerico, Nathanial A. Byrnes, Andrew ...
IPPS
2006
IEEE
15 years 10 months ago
Parallelization and performance characterization of protein 3D structure prediction of Rosetta
The prediction of protein 3D structure has become a hot research area in the post-genome era, through which people can understand a protein’s function in health and disease, exp...
Wenlong Li, Tao Wang, Eric Li, D. Baker, Li Jin, S...
PPOPP
2010
ACM
16 years 1 months ago
Modeling transactional memory workload performance
Transactional memory promises to make parallel programming easier than with fine-grained locking, while performing just as well. This performance claim is not always borne out bec...
Donald E. Porter, Emmett Witchel
HPCA
2011
IEEE
14 years 8 months ago
Essential roles of exploiting internal parallelism of flash memory based solid state drives in high-speed data processing
Flash memory based solid state drives (SSDs) have shown a great potential to change storage infrastructure fundamentally through their high performance and low power. Most recent ...
Feng Chen, Rubao Lee, Xiaodong Zhang
HPDC
2010
IEEE
15 years 5 months ago
Optimization of a parallel permutation testing function for the SPRINT R package
The statistical language R and Bioconductor package are favoured by many biostatisticians for processing microarray data. The amount of data produced by these analyses has reached...
Savvas Petrou, Terence M. Sloan, Muriel Mewissen, ...