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BMCBI
2005
104views more  BMCBI 2005»
14 years 11 months ago
Scoring functions for transcription factor binding site prediction
Background: Transcription factor binding site (TFBS) prediction is a difficult problem, which requires a good scoring function to discriminate between real binding sites and backg...
Markus T. Friberg, Peter von Rohr, Gaston H. Gonne...
BMCBI
2010
100views more  BMCBI 2010»
14 years 12 months ago
Partitioning of copy-number genotypes in pedigrees
Background: Copy number variations (CNVs) and polymorphisms (CNPs) have only recently gained the genetic community's attention. Conservative estimates have shown that CNVs an...
Louis-Philippe Lemieux Perreault, Gregor U. Andelf...
BMCBI
2007
149views more  BMCBI 2007»
14 years 11 months ago
SAMPI: Protein Identification with Mass Spectra Alignments
Background: Mass spectrometry based peptide mass fingerprints (PMFs) offer a fast, efficient, and robust method for protein identification. A protein is digested (usually by tryps...
Hans-Michael Kaltenbach, Andreas Wilke, Sebastian ...
BMCBI
2006
87views more  BMCBI 2006»
14 years 11 months ago
Phylogeny based discovery of regulatory elements
Background: Algorithms that locate evolutionarily conserved sequences have become powerful tools for finding functional DNA elements, including transcription factor binding sites;...
Jason Gertz, Justin C. Fay, Barak A. Cohen
ENVSOFT
2006
84views more  ENVSOFT 2006»
14 years 11 months ago
Modeling the fate of down-the-drain chemicals in rivers: An improved software for GREAT-ER
GREAT-ER (Geography-referenced Regional Exposure Assessment Tool for European Rivers) is a model system for predicting chemical fate and exposure in surface waters. The GREAT-ER a...
F. Koormann, J. Rominger, D. Schowanek, J.-O. Wagn...