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BMCBI
2004
126views more  BMCBI 2004»
14 years 9 months ago
A probabilistic model for the evolution of RNA structure
Background: For the purposes of finding and aligning noncoding RNA gene- and cis-regulatory elements in multiple-genome datasets, it is useful to be able to derive multi-sequence ...
Ian Holmes
BMCBI
2005
162views more  BMCBI 2005»
14 years 9 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes
GG
2010
Springer
14 years 8 months ago
Formal Analysis of Functional Behaviour for Model Transformations Based on Triple Graph Grammars
Abstract. Triple Graph Grammars (TGGs) are a well-established concept for the specification of model transformations. In previous work we have formalized and analyzed already cruc...
Frank Hermann, Hartmut Ehrig, Fernando Orejas, Ulr...
RAID
2009
Springer
15 years 4 months ago
Using Formal Grammar and Genetic Operators to Evolve Malware
In this paper, we leverage the concepts of formal grammar and genetic operators to evolve malware. As a case study, we take COM infectors and design their formal grammar with produ...
Sadia Noreen, Shafaq Murtaza, M. Zubair Shafiq, Mu...
OOPSLA
2004
Springer
15 years 2 months ago
A language-independent approach to software maintenance using grammar adapters
A long-standing goal of software engineering is to construct software that is easily modified and extended. Recent advances in software design techniques, such as aspect-oriented ...
Suman Roychoudhury