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BMCBI
2004
126views more  BMCBI 2004»
15 years 3 months ago
A probabilistic model for the evolution of RNA structure
Background: For the purposes of finding and aligning noncoding RNA gene- and cis-regulatory elements in multiple-genome datasets, it is useful to be able to derive multi-sequence ...
Ian Holmes
148
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BMCBI
2005
162views more  BMCBI 2005»
15 years 3 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes
GG
2010
Springer
15 years 2 months ago
Formal Analysis of Functional Behaviour for Model Transformations Based on Triple Graph Grammars
Abstract. Triple Graph Grammars (TGGs) are a well-established concept for the specification of model transformations. In previous work we have formalized and analyzed already cruc...
Frank Hermann, Hartmut Ehrig, Fernando Orejas, Ulr...
RAID
2009
Springer
15 years 10 months ago
Using Formal Grammar and Genetic Operators to Evolve Malware
In this paper, we leverage the concepts of formal grammar and genetic operators to evolve malware. As a case study, we take COM infectors and design their formal grammar with produ...
Sadia Noreen, Shafaq Murtaza, M. Zubair Shafiq, Mu...
OOPSLA
2004
Springer
15 years 9 months ago
A language-independent approach to software maintenance using grammar adapters
A long-standing goal of software engineering is to construct software that is easily modified and extended. Recent advances in software design techniques, such as aspect-oriented ...
Suman Roychoudhury