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IPPS
2009
IEEE
15 years 10 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
IPPS
2003
IEEE
15 years 9 months ago
Autonomous Protocols for Bandwidth-Centric Scheduling of Independent-Task Applications
In this paper we investigate protocols for scheduling applications that consist of large numbers of identical, independent tasks on large-scale computing platforms. By imposing a ...
Barbara Kreaseck, Larry Carter, Henri Casanova, Je...
BMCBI
2008
89views more  BMCBI 2008»
15 years 4 months ago
R/parallel - speeding up bioinformatics analysis with R
Background: R is the preferred tool for statistical analysis of many bioinformaticians due in part to the increasing number of freely available analytical methods. Such methods ca...
Gonzalo Vera, Ritsert C. Jansen, Remo Suppi
140
Voted
COORDINATION
2009
Springer
16 years 4 months ago
Multicore Scheduling for Lightweight Communicating Processes
Process-oriented programming is a design methodology in which software applications are constructed from communicating concurrent processes. A process-oriented design is typically ...
Carl G. Ritson, Adam T. Sampson, Fred R. M. Barnes
130
Voted
IPPS
2002
IEEE
15 years 8 months ago
Implementing the NAS Benchmark MG in SAC
SAC is a purely functional array processing language designed with numerical applications in mind. It supports generic, high-level program specifications in the style of APL. How...
Clemens Grelck