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» Automated Derivation of Translators From Annotated Grammars
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99
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BMCBI
2011
14 years 1 months ago
The Proteogenomic Mapping Tool
Background: High-throughput mass spectrometry (MS) proteomics data is increasingly being used to complement traditional structural genome annotation methods. To keep pace with the...
William S. Sanders, Nan Wang, Susan M. Bridges, Br...
BMCBI
2007
114views more  BMCBI 2007»
14 years 9 months ago
Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome
Background: The structure annotation of a genome is based either on ab initio methodologies or on similaritiy searches versus molecules that have been already annotated. Ab initio...
Nunzio D'Agostino, Alessandra Traini, Luigi Frusci...
TOOLS
2009
IEEE
15 years 4 months ago
Guaranteeing Syntactic Correctness for All Product Line Variants: A Language-Independent Approach
A software product line (SPL) is a family of related program variants in a well-defined domain, generated from a set of features. A fundamental difference from classical applicati...
Christian Kästner, Sven Apel, Salvador Trujil...
BMCBI
2005
142views more  BMCBI 2005»
14 years 9 months ago
transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
Background: Alignments of homologous DNA sequences are crucial for comparative genomics and phylogenetic analysis. However, multiple alignment represents a computationally difficu...
Olaf R. P. Bininda-Emonds
85
Voted
VLSID
2007
IEEE
153views VLSI» more  VLSID 2007»
15 years 10 months ago
Extracting Logic Circuit Structure from Conjunctive Normal Form Descriptions
Boolean Satisfiability is seeing increasing use as a decision procedure in Electronic Design Automation (EDA) and other domains. Most applications encode their domain specific cons...
Zhaohui Fu, Sharad Malik