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BMCBI
2010
175views more  BMCBI 2010»
15 years 1 months ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
ICPP
2006
IEEE
15 years 7 months ago
A Flexible and Dynamic Infrastructure for MPI Tool Interoperability
The MPI standard provides tool builders with an efficient profiling interface, PMPI. Although many tools have successfully used this interface, it has three major drawbacks: a n...
Martin Schulz, Bronis R. de Supinski
CLUSTER
2009
IEEE
14 years 11 months ago
Design alternatives for implementing fence synchronization in MPI-2 one-sided communication for InfiniBand clusters
Scientific computing has seen an immense growth in recent years. The Message Passing Interface (MPI) has become the de-facto standard for parallel programming model for distribute...
Gopalakrishnan Santhanaraman, Tejus Gangadharappa,...
HPDC
2010
IEEE
15 years 2 months ago
Scalability of communicators and groups in MPI
As the number of cores inside compute clusters continues to grow, the scalability of MPI (Message Passing Interface) is important to ensure that programs can continue to execute o...
Humaira Kamal, Seyed M. Mirtaheri, Alan Wagner
CF
2007
ACM
15 years 5 months ago
Fast compiler optimisation evaluation using code-feature based performance prediction
Performance tuning is an important and time consuming task which may have to be repeated for each new application and platform. Although iterative optimisation can automate this p...
Christophe Dubach, John Cavazos, Björn Franke...