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IPPS
2005
IEEE
15 years 5 months ago
Automatic Support for Irregular Computations in a High-Level Language
The problem of writing high performance parallel applications becomes even more challenging when irregular, sparse or adaptive methods are employed. In this paper we introduce com...
Jimmy Su, Katherine A. Yelick
CODES
2001
IEEE
15 years 3 months ago
Compiler-directed selection of dynamic memory layouts
Compiler technology is becoming a key component in the design of embedded systems, mostly due to increasing participation of software in the design process. Meeting system-level ob...
Mahmut T. Kandemir, Ismail Kadayif
LCTRTS
2005
Springer
15 years 5 months ago
Cache aware optimization of stream programs
Effective use of the memory hierarchy is critical for achieving high performance on embedded systems. We focus on the class of streaming applications, which is increasingly preval...
Janis Sermulins, William Thies, Rodric M. Rabbah, ...
VLDB
1993
ACM
116views Database» more  VLDB 1993»
15 years 3 months ago
Algebraic Optimization of Computations over Scientific Databases
Although scientific data analysis increasingly requires accessandmanipulation of large quantitiesof data,current databasetechnology fails to meet the needsof scientific processing...
Richard H. Wolniewicz, Goetz Graefe
BMCBI
2006
113views more  BMCBI 2006»
14 years 12 months ago
GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima
Background: Computational discovery of transcription factor binding sites (TFBS) is a challenging but important problem of bioinformatics. In this study, improvement of a Gibbs sa...
Kazuhito Shida