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» Automatic Extraction of Proteins and Their Interactions from...
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WWW
2009
ACM
15 years 4 months ago
Automatically filling form-based web interfaces with free text inputs
On the web of today the most prevalent solution for users to interact with data-intensive applications is the use of formbased interfaces composed by several data input fields, s...
Guilherme A. Toda, Eli Cortez, Filipe de Sá...
ICTAI
2008
IEEE
15 years 4 months ago
Information Extraction as an Ontology Population Task and Its Application to Genic Interactions
Ontologies are a well-motivated formal representation to model knowledge needed to extract and encode data from text. Yet, their tight integration with Information Extraction (IE)...
Alain-Pierre Manine, Érick Alphonse, Philip...
BMCBI
2007
154views more  BMCBI 2007»
14 years 9 months ago
PepBank - a database of peptides based on sequence text mining and public peptide data sources
Background: Peptides are important molecules with diverse biological functions and biomedical uses. To date, there does not exist a single, searchable archive for peptide sequence...
Timur Shtatland, Daniel Guettler, Misha Kossodo, M...
NAR
2007
91views more  NAR 2007»
14 years 9 months ago
RNABindR: a server for analyzing and predicting RNA-binding sites in proteins
Understanding interactions between proteins and RNA is key to deciphering the mechanisms of many important biological processes. Here we describe RNABindR, a web-based server that...
Michael Terribilini, Jeffry D. Sander, Jae-Hyung L...
RECOMB
2005
Springer
15 years 3 months ago
An Interactive Map of Regulatory Networks of Pseudomonas aeruginosa Genome
For studying gene regulatory and protein signaling networks, we have developed an interactive map for the Pseudomonas aeruginosa genome. We first represent genes, proteins and the...
Weihui Wu, Yongling Song, Shouguang Jin, Su-Shing ...