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SIGKDD
2002
113views more  SIGKDD 2002»
14 years 9 months ago
Combining Data and Text Mining Techniques for Yeast Gene Regulation Prediction: A Case Study
In order to solve task 2 of the KDD Cup 2002, we exploited various available information sources. In particular, use of relational information describing the interactions among ge...
Mark-A. Krogel, Marcus Denecke, Marco Landwehr, To...
BMCBI
2006
118views more  BMCBI 2006»
14 years 9 months ago
Exploration of biological network centralities with CentiBiN
Background: The elucidation of whole-cell regulatory, metabolic, interaction and other biological networks generates the need for a meaningful ranking of network elements. Central...
Björn H. Junker, Dirk Koschützki, Falk S...
BMCBI
2008
101views more  BMCBI 2008»
14 years 9 months ago
Prediction of glycosylation sites using random forests
Background: Post translational modifications (PTMs) occur in the vast majority of proteins and are essential for function. Prediction of the sequence location of PTMs enhances the...
Stephen E. Hamby, Jonathan D. Hirst
COLING
2008
14 years 11 months ago
Event Frame Extraction Based on a Gene Regulation Corpus
This paper describes the supervised acquisition of semantic event frames based pus of biomedical abstracts, in which the biological process of E. coli gene regulation has been lin...
Yutaka Sasaki, Paul Thompson, Philip Cotter, John ...
BMCBI
2005
114views more  BMCBI 2005»
14 years 9 months ago
AutoFACT: An Automatic Functional Annotation and Classification Tool
Background: Assignment of function to new molecular sequence data is an essential step in genomics projects. The usual process involves similarity searches of a given sequence aga...
Liisa B. Koski, Michael W. Gray, B. Franz Lang, Ge...