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BMCBI
2006
112views more  BMCBI 2006»
14 years 9 months ago
A correlated motif approach for finding short linear motifs from protein interaction networks
Background: An important class of interaction switches for biological circuits and disease pathways are short binding motifs. However, the biological experiments to find these bin...
Soon-Heng Tan, Hugo Willy, Wing-Kin Sung, See-Kion...
CORR
2010
Springer
83views Education» more  CORR 2010»
14 years 9 months ago
Sentence Simplification Aids Protein-Protein Interaction Extraction
Accurate systems for extracting ProteinProtein Interactions (PPIs) automatically from biomedical articles can help accelerate biomedical research. Biomedical Informatics researche...
Siddhartha Jonnalagadda, Graciela Gonzalez
BMCBI
2010
162views more  BMCBI 2010»
14 years 9 months ago
Moara: a Java library for extracting and normalizing gene and protein mentions
Background: Gene/protein recognition and normalization are important preliminary steps for many biological text mining tasks, such as information retrieval, protein-protein intera...
Mariana L. Neves, José María Carazo,...
BMCBI
2007
165views more  BMCBI 2007»
14 years 9 months ago
Automatic reconstruction of a bacterial regulatory network using Natural Language Processing
Background: Manual curation of biological databases, an expensive and labor-intensive process, is essential for high quality integrated data. In this paper we report the implement...
Carlos Rodríguez Penagos, Heladia Salgado, ...
WS
2010
ACM
14 years 8 months ago
Structured literature image finder: Parsing text and figures in biomedical literature
The SLIF project combines text-mining and image processing to extract structured information from biomedical literature. SLIF extracts images and their captions from published pap...
Amr Ahmed, Andrew Arnold, Luís Pedro Coelho...