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BMCBI
2008
152views more  BMCBI 2008»
14 years 11 months ago
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Background: Current sequencing technologies give access to sequence information for genomes and metagenomes at a tremendous speed. Subsequent data processing is mainly performed b...
Michael Richter, Thierry Lombardot, Ivaylo Kostadi...
BMCBI
2006
114views more  BMCBI 2006»
14 years 11 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
BMCBI
2006
107views more  BMCBI 2006»
14 years 11 months ago
Simplifying gene trees for easier comprehension
Background: In the genomic age, gene trees may contain large amounts of data making them hard to read and understand. Therefore, an automated simplification is important. Results:...
Paul-Ludwig Lott, Marvin Mundry, Christoph Sassenb...
BMCBI
2006
126views more  BMCBI 2006»
14 years 11 months ago
A Regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous data
Background: As a variety of functional genomic and proteomic techniques become available, there is an increasing need for functional analysis methodologies that integrate heteroge...
Zizhen Yao, Walter L. Ruzzo
CORR
2007
Springer
114views Education» more  CORR 2007»
14 years 11 months ago
On the Throughput of Secure Hybrid-ARQ Protocols for Gaussian Block-Fading Channels
—The focus of this paper is an information-theoretic study of retransmission protocols for reliable packet communication under a secrecy constraint. The hybrid automatic retransm...
Xiaojun Tang, Ruoheng Liu, Predrag Spasojevic, H. ...