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176
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BMCBI
2006
374views more  BMCBI 2006»
15 years 4 months ago
AMDA: an R package for the automated microarray data analysis
Background: Microarrays are routinely used to assess mRNA transcript levels on a genome-wide scale. Large amount of microarray datasets are now available in several databases, and...
Mattia Pelizzola, Norman Pavelka, Maria Foti, Paol...
BMCBI
2006
97views more  BMCBI 2006»
15 years 4 months ago
REEF: searching REgionally Enriched Features in genomes
Background: In Eukaryotic genomes, different features including genes are not uniformly distributed. The integration of annotation information and genomic position of functional D...
Alessandro Coppe, Gian Antonio Danieli, Stefania B...
BMCBI
2007
112views more  BMCBI 2007»
15 years 4 months ago
Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis
Background: Gene clustering has been widely used to group genes with similar expression pattern in microarray data analysis. Subsequent enrichment analysis using predefined gene s...
Tae-Min Kim, Yeun-Jun Chung, Mun-Gan Rhyu, Myeong ...
145
Voted
BMCBI
2007
142views more  BMCBI 2007»
15 years 4 months ago
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics
nd: A key abstraction in representing proteomics knowledge is the notion of unique identifiers for individual entities (e.g. proteins) and the massive graph of relationships among...
Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Mar...
129
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CORR
2007
Springer
151views Education» more  CORR 2007»
15 years 4 months ago
Decision tree modeling with relational views
Data mining is a useful decision support technique that can be used to discover production rules in warehouses or corporate data. Data mining research has made much effort to appl...
Fadila Bentayeb, Jérôme Darmont