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BMCBI
2011
14 years 11 months ago
OrthoInspector: comprehensive orthology analysis and visual exploration
Background: The accurate determination of orthology and inparalogy relationships is essential for comparative sequence analysis, functional gene annotation and evolutionary studie...
Benjamin Linard, Julie D. Thompson, Olivier Poch, ...
BMCBI
2011
14 years 11 months ago
N-gram analysis of 970 microbial organisms reveals presence of biological language models
Background: It has been suggested previously that genome and proteome sequences show characteristics typical of natural-language texts such as “signature-style” word usage ind...
Hatice U. Osmanbeyoglu, Madhavi Ganapathiraju
BMCBI
2011
14 years 11 months ago
Taxon ordering in phylogenetic trees: a workbench test
Background: Phylogenetic trees are an important tool for representing evolutionary relationships among organisms. In a phylogram or chronogram, the ordering of taxa is not conside...
Francesco Cerutti, Luigi Bertolotti, Tony L. Goldb...
TEC
2012
195views Formal Methods» more  TEC 2012»
13 years 6 months ago
The Effects of Constant and Bit-Wise Neutrality on Problem Hardness, Fitness Distance Correlation and Phenotypic Mutation Rates
Kimura’s neutral theory of evolution has inspired researchers from the evolutionary computation community to incorporate neutrality into Evolutionary Algorithms (EAs) in the hop...
Riccardo Poli, Edgar Galván López
151
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KDD
2005
ACM
151views Data Mining» more  KDD 2005»
16 years 4 months ago
Discovering evolutionary theme patterns from text: an exploration of temporal text mining
Temporal Text Mining (TTM) is concerned with discovering temporal patterns in text information collected over time. Since most text information bears some time stamps, TTM has man...
Qiaozhu Mei, ChengXiang Zhai