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CPM
2005
Springer
125views Combinatorics» more  CPM 2005»
15 years 6 months ago
Parametric Analysis for Ungapped Markov Models of Evolution
We present efficient sensitivity-analysis algorithms for two problems involving Markov models of sequence evolution: ancestral reconstruction in evolutionary trees and local ungap...
David Fernández-Baca, Balaji Venkatachalam
EOR
2006
110views more  EOR 2006»
15 years 4 months ago
Scatter search with path relinking for phylogenetic inference
We propose the use of scatter search with path relinking for the inference of phylogenetic trees. Solutions are here represented as trees whose leaves span the set of species unde...
Carlos Cotta
JCB
2007
99views more  JCB 2007»
15 years 3 months ago
Duplication and Inversion History of a Tandemly Repeated Genes Family
Given a phylogenetic tree for a family of tandemly repeated genes and their signed order on the chromosome, we aim to find the minimum number of inversions compatible with an evo...
Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk, ...
JUCS
2010
148views more  JUCS 2010»
15 years 2 months ago
Applying RFD to Construct Optimal Quality-Investment Trees
: River Formation Dynamics (RFD) is an evolutionary computation method based on copying how drops form rivers by eroding the ground and depositing sediments. Given a cost-evaluated...
Pablo Rabanal, Ismael Rodríguez, Fernando R...
BMCBI
2011
14 years 11 months ago
Simulated evolution applied to study the genetic code optimality using a model of codon reassignments
Background: As the canonical code is not universal, different theories about its origin and organization have appeared. The optimization or level of adaptation of the canonical ge...
Jose Santos, Ángel Monteagudo