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GECCO
2007
Springer
201views Optimization» more  GECCO 2007»
15 years 3 months ago
A parallel framework for loopy belief propagation
There are many innovative proposals introduced in the literature under the evolutionary computation field, from which estimation of distribution algorithms (EDAs) is one of them....
Alexander Mendiburu, Roberto Santana, Jose Antonio...
BMCBI
2006
120views more  BMCBI 2006»
14 years 9 months ago
Projections for fast protein structure retrieval
Background: In recent times, there has been an exponential rise in the number of protein structures in databases e.g. PDB. So, design of fast algorithms capable of querying such d...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
BMCBI
2005
162views more  BMCBI 2005»
14 years 9 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes
ALMOB
2008
92views more  ALMOB 2008»
14 years 10 months ago
Reconstructing phylogenies from noisy quartets in polynomial time with a high success probability
Background: In recent years, quartet-based phylogeny reconstruction methods have received considerable attentions in the computational biology community. Traditionally, the accura...
Gang Wu, Ming-Yang Kao, Guohui Lin, Jia-Huai You
BMCBI
2006
92views more  BMCBI 2006»
14 years 9 months ago
Recrafting the neighbor-joining method
Background: The neighbor-joining method by Saitou and Nei is a widely used method for constructing phylogenetic trees. The formulation of the method gives rise to a canonical (n3)...
Thomas Mailund, Gerth Stølting Brodal, Rolf...