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BMCBI
2004
146views more  BMCBI 2004»
15 years 3 months ago
Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
Background: Functional genomics studies are yielding information about regulatory processes in the cell at an unprecedented scale. In the yeast S. cerevisiae, DNA microarrays have...
Feng Gao, Barrett C. Foat, Harmen J. Bussemaker
PAM
2010
Springer
15 years 10 months ago
Network DVR: A Programmable Framework for Application-Aware Trace Collection
Network traces are essential for a wide range of network applications, including traffic analysis, network measurement, performance monitoring, and security analysis. Existing cap...
Chia-Wei Chang, Alexandre Gerber, Bill Lin, Subhab...
BMCBI
2008
130views more  BMCBI 2008»
15 years 3 months ago
Function approximation approach to the inference of reduced NGnet models of genetic networks
Background: The inference of a genetic network is a problem in which mutual interactions among genes are deduced using time-series of gene expression patterns. While a number of m...
Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Hi...
BMCBI
2002
214views more  BMCBI 2002»
15 years 3 months ago
Automated modelling of signal transduction networks
Background: Intracellular signal transduction is achieved by networks of proteins and small molecules that transmit information from the cell surface to the nucleus, where they ul...
Martin Steffen, Allegra Petti, John Aach, Patrik D...
FAST
2010
15 years 5 months ago
Discovery of Application Workloads from Network File Traces
An understanding of application I/O access patterns is useful in several situations. First, gaining insight into what applications are doing with their data at a semantic level he...
Neeraja J. Yadwadkar, Chiranjib Bhattacharyya, K. ...