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» Bayesian adaptive sequence alignment algorithms
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BIOINFORMATICS
1998
75views more  BIOINFORMATICS 1998»
14 years 9 months ago
Bayesian adaptive sequence alignment algorithms
Jun Zhu, Jun S. Liu, Charles E. Lawrence
BMCBI
2005
122views more  BMCBI 2005»
14 years 10 months ago
Bayesian coestimation of phylogeny and sequence alignment
Background: Two central problems in computational biology are the determination of the alignment and phylogeny of a set of biological sequences. The traditional approach to this p...
Gerton Lunter, István Miklós, Alexei...
ICPP
2003
IEEE
15 years 3 months ago
FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment
Pairwise sequence alignment is a fundamental operation for homology search in bioinformatics. For two DNA or protein sequences of length ¢ and £ , full-matrix (FM), dynamic prog...
Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane S...
BMCBI
2010
142views more  BMCBI 2010»
14 years 10 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...
EUSFLAT
2003
122views Fuzzy Logic» more  EUSFLAT 2003»
14 years 11 months ago
Structure recognition on sequences with a neuro-fuzzy-system
We present a formal description of a neurofuzzy system capable of aligning two sequences recognizing their internal structure. The alignment is done on two levels: grouping of the...
Klaus Dalinghaus, Tillman Weyde