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EUROSYS
2010
ACM
15 years 9 months ago
Delay Scheduling: A Simple Technique for Achieving Locality and Fairness in Cluster Scheduling
As organizations start to use data-intensive cluster computing systems like Hadoop and Dryad for more applications, there is a growing need to share clusters between users. Howeve...
Matei Zaharia, Dhruba Borthakur, Joydeep Sen Sarma...
CORR
2010
Springer
136views Education» more  CORR 2010»
14 years 9 months ago
An Inverse Power Method for Nonlinear Eigenproblems with Applications in 1-Spectral Clustering and Sparse PCA
Many problems in machine learning and statistics can be formulated as (generalized) eigenproblems. In terms of the associated optimization problem, computing linear eigenvectors a...
Matthias Hein, Thomas Bühler
CONSTRAINTS
2008
95views more  CONSTRAINTS 2008»
14 years 12 months ago
Efficient Sequence Alignment with Side-Constraints by Cluster Tree Elimination
Aligning DNA and protein sequences is a core technique in molecular biology. Often, it is desirable to include partial prior knowledge and conditions in an alignment. Going beyond...
Sebastian Will, Anke Busch, Rolf Backofen
BMCBI
2010
113views more  BMCBI 2010»
14 years 12 months ago
Efficient protein alignment algorithm for protein search
Background: Proteins show a great variety of 3D conformations, which can be used to infer their evolutionary relationship and to classify them into more general groups; therefore ...
Zaixin Lu, Zhiyu Zhao, Bin Fu
BMCBI
2008
80views more  BMCBI 2008»
14 years 12 months ago
Towards an automatic classification of protein structural domains based on structural similarity
Background: Formal classification of a large collection of protein structures aids the understanding of evolutionary relationships among them. Classifications involving manual ste...
Vichetra Sam, Chin-Hsien Tai, Jean Garnier, Jean-F...