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» Binding as sets of scopes
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WWW
2001
ACM
15 years 11 months ago
XML Query Forms (XQForms): Declarative Specification of XML Query Interfaces
XQForms is the first generator of Web-based query forms and reports for XML data. XQForms takes as input (i) XML Schemas that model the data to be queried and presented, (ii) decl...
Michalis Petropoulos, Vasilis Vassalos, Yannis Pap...
VLDB
2007
ACM
104views Database» more  VLDB 2007»
15 years 10 months ago
Extending Dependencies with Conditions
This paper introduces a class of conditional inclusion dependencies (CINDs), which extends traditional inclusion dependencies (INDs) by enforcing bindings of semantically related ...
Loreto Bravo, Wenfei Fan, Shuai Ma
85
Voted
ISMB
2000
14 years 11 months ago
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
97
Voted
BMCBI
2007
179views more  BMCBI 2007»
14 years 10 months ago
rMotifGen: random motif generator for DNA and protein sequences
Background: Detection of short, subtle conserved motif regions within a set of related DNA or amino acid sequences can lead to discoveries about important regulatory domains such ...
Eric C. Rouchka, C. Timothy Hardin
93
Voted
BMCBI
2007
133views more  BMCBI 2007»
14 years 10 months ago
MATLIGN: a motif clustering, comparison and matching tool
Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...
Matti Kankainen, Ari Löytynoja