XQForms is the first generator of Web-based query forms and reports for XML data. XQForms takes as input (i) XML Schemas that model the data to be queried and presented, (ii) decl...
This paper introduces a class of conditional inclusion dependencies (CINDs), which extends traditional inclusion dependencies (INDs) by enforcing bindings of semantically related ...
We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
Background: Detection of short, subtle conserved motif regions within a set of related DNA or amino acid sequences can lead to discoveries about important regulatory domains such ...
Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...