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» Binding as sets of scopes
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119
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BMCBI
2007
145views more  BMCBI 2007»
15 years 14 days ago
Improved benchmarks for computational motif discovery
Background: An important step in annotation of sequenced genomes is the identification of transcription factor binding sites. More than a hundred different computational methods h...
Geir Kjetil Sandve, Osman Abul, Vegard Walseng, Fi...
86
Voted
IJCAI
1993
15 years 1 months ago
Multiple Predicate Learning
We study multiple predicate learning in an empirical setting. Problems with existing inductive logic programming approaches in this setting are sketched and an empirical ILP syste...
Luc De Raedt, Nada Lavrac, Saso Dzeroski
RECOMB
2003
Springer
16 years 23 days ago
Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts
Background: Transcriptional regulation in eukaryotes often involves multiple transcription factors binding to the same transcription control region, and to understand the regulato...
Derek Y. Chiang, Alan M. Moses, Manolis Kamvysseli...
104
Voted
BMCBI
2006
112views more  BMCBI 2006»
15 years 15 days ago
A correlated motif approach for finding short linear motifs from protein interaction networks
Background: An important class of interaction switches for biological circuits and disease pathways are short binding motifs. However, the biological experiments to find these bin...
Soon-Heng Tan, Hugo Willy, Wing-Kin Sung, See-Kion...
BMCBI
2010
96views more  BMCBI 2010»
15 years 17 days ago
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
Background: Chromatin immunoprecipitation (ChIP) followed by high-throughput sequencing (ChIP-seq) or ChIP followed by genome tiling array analysis (ChIP-chip) have become standar...
Lihua J. Zhu, Claude Gazin, Nathan D. Lawson, Herv...