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» Binding as sets of scopes
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120
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ENGL
2008
78views more  ENGL 2008»
15 years 17 days ago
Threshold for Positional Weight Matrix
In biological sequence research, the positional weight matrix (PWM) is often used to search for putative transcription factor binding sites. A set of experimentally verified oligon...
Yunlian Pan, Sieu Phan
BMCBI
2006
120views more  BMCBI 2006»
15 years 17 days ago
An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse
Background: Many statistical algorithms combine microarray expression data and genome sequence data to identify transcription factor binding motifs in the low eukaryotic genomes. ...
Ryung S. Kim, Hongkai Ji, Wing Hung Wong
117
Voted
NAR
2010
184views more  NAR 2010»
14 years 7 months ago
RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes
The RegPrecise database (http://regprecise.lbl.gov) was developed for capturing, visualization and analysis of predicted transcription factor regulons in prokaryotes that were rec...
Pavel S. Novichkov, Olga N. Laikova, Elena S. Novi...
93
Voted
BIRTHDAY
2008
Springer
15 years 2 months ago
A Category of Explicit Fusions
Name passing calculi are nowadays an established field on its own. Besides their practical relevance, they offered an intriguing challenge, since the standard operational, denotati...
Filippo Bonchi, Maria Grazia Buscemi, Vincenzo Cia...
90
Voted
BMCBI
2010
90views more  BMCBI 2010»
15 years 19 days ago
PuTmiR: A database for extracting neighboring transcription factors of human microRNAs
Background: Some of the recent investigations in systems biology have revealed the existence of a complex regulatory network between genes, microRNAs (miRNAs) and transcription fa...
Sanghamitra Bandyopadhyay, Malay Bhattacharyya