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SAC
2004
ACM
15 years 3 months ago
Classifying biological articles using web resources
Text classification systems on biomedical literature aim to select relevant articles to a specific issue from large corpora. Most systems with an acceptable accuracy are based o...
Francisco M. Couto, Bruno Martins, Mário J....
97
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IJCAI
2003
14 years 11 months ago
Hierarchical Hidden Markov Models for Information Extraction
Information extraction can be defined as the task of automatically extracting instances of specified classes or relations from text. We consider the case of using machine learni...
Marios Skounakis, Mark Craven, Soumya Ray
92
Voted
BMCBI
2005
251views more  BMCBI 2005»
14 years 9 months ago
Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation
Background: The ability to distinguish between genes and proteins is essential for understanding biological text. Support Vector Machines (SVMs) have been proven to be very effici...
Tapio Pahikkala, Filip Ginter, Jorma Boberg, Jouni...
76
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TREC
2004
14 years 11 months ago
Concept Extraction and Synonymy Management for Biomedical Information Retrieval
This paper reports on work done for the Genomics Track at TREC 2004 by ConverSpeech LLC in conjunction with scientists at the Saccharomyces Genome Database (SGD), the model organi...
Colleen E. Crangle, Alex Zbyslaw, J. Michael Cherr...
BMCBI
2008
149views more  BMCBI 2008»
14 years 9 months ago
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning
Background: Automated extraction of protein-protein interactions (PPI) is an important and widely studied task in biomedical text mining. We propose a graph kernel based approach ...
Antti Airola, Sampo Pyysalo, Jari Björne, Tap...