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BMCBI
2007
131views more  BMCBI 2007»
14 years 11 months ago
FUNC: a package for detecting significant associations between gene sets and ontological annotations
Background: Genome-wide expression, sequence and association studies typically yield large sets of gene candidates, which must then be further analysed and interpreted. Informatio...
Kay Prüfer, Bjoern Muetzel, Hong Hai Do, Gunt...
BMCBI
2010
142views more  BMCBI 2010»
14 years 11 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...
BMCBI
2007
116views more  BMCBI 2007»
14 years 11 months ago
primetv: a viewer for reconciled trees
Background: Evolutionary processes, such as gene family evolution or parasite-host cospeciation, can often be viewed as a tree evolving inside another tree. Relating two given tre...
Bengt Sennblad, Eva Schreil, Ann-Charlotte Berglun...
BMCBI
2008
123views more  BMCBI 2008»
14 years 11 months ago
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
Background: The structure of many eukaryotic cell regulatory proteins is highly modular. They are assembled from globular domains, segments of natively disordered polypeptides and...
Claudia Chica, Alberto Labarga, Cathryn M. Gould, ...
CORR
2010
Springer
196views Education» more  CORR 2010»
14 years 11 months ago
SWiM -- A Semantic Wiki for Mathematical Knowledge Management
Abstract. SWiM is a semantic wiki for collaboratively building, editing and browsing mathematical knowledge represented in the domainspecific structural semantic markup language OM...
Christoph Lange 0002