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NAR
2006
134views more  NAR 2006»
15 years 5 months ago
The MPI Bioinformatics Toolkit for protein sequence analysis
The MPI Bioinformatics Toolkit is an interactive web service which offers access to a great variety of public and in-house bioinformatics tools. They are grouped into different se...
Andreas Biegert, Christian Mayer, Michael Remmert,...
VLDB
2005
ACM
184views Database» more  VLDB 2005»
16 years 5 months ago
Rule-based workflow management for bioinformatics
We describe a data-centric software architecture for bioinformatics workflows and a rule-based workflow enactment system that uses declarative specifications of data dependences be...
John S. Conery, Julian Catchen, Michael Lynch
161
Voted
ICECCS
2006
IEEE
126views Hardware» more  ICECCS 2006»
15 years 11 months ago
Model-based Design of Distributed Collaborative Bioinformatics Processes in the jABC
Abstract— Our approach to the model-driven collaborative design of workflows for bioinformatic applications uses the jABC [6] for model driven mediation and choreography to comp...
Tiziana Margaria, Christian Kubczak, Marc Njoku, B...
EUROPAR
2004
Springer
15 years 10 months ago
A Generic Parallel Pattern-Based System for Bioinformatics
Abstract. Parallel program design patterns provide users a new way to get parallel programs without much effort. However, it is always a serious limitation for most existing parall...
Weiguo Liu, Bertil Schmidt
BIB
2006
150views more  BIB 2006»
15 years 5 months ago
Open source tools and toolkits for bioinformatics: significance, and where are we?
This review summarizes important work in open-source bioinformatics software that has occurred over the past couple of years. The survey is intended to illustrate how programs and...
Jason E. Stajich, Hilmar Lapp