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NAR
2006
134views more  NAR 2006»
15 years 3 months ago
The MPI Bioinformatics Toolkit for protein sequence analysis
The MPI Bioinformatics Toolkit is an interactive web service which offers access to a great variety of public and in-house bioinformatics tools. They are grouped into different se...
Andreas Biegert, Christian Mayer, Michael Remmert,...
221
Voted
VLDB
2005
ACM
184views Database» more  VLDB 2005»
16 years 3 months ago
Rule-based workflow management for bioinformatics
We describe a data-centric software architecture for bioinformatics workflows and a rule-based workflow enactment system that uses declarative specifications of data dependences be...
John S. Conery, Julian Catchen, Michael Lynch
ICECCS
2006
IEEE
126views Hardware» more  ICECCS 2006»
15 years 9 months ago
Model-based Design of Distributed Collaborative Bioinformatics Processes in the jABC
Abstract— Our approach to the model-driven collaborative design of workflows for bioinformatic applications uses the jABC [6] for model driven mediation and choreography to comp...
Tiziana Margaria, Christian Kubczak, Marc Njoku, B...
EUROPAR
2004
Springer
15 years 8 months ago
A Generic Parallel Pattern-Based System for Bioinformatics
Abstract. Parallel program design patterns provide users a new way to get parallel programs without much effort. However, it is always a serious limitation for most existing parall...
Weiguo Liu, Bertil Schmidt
BIB
2006
150views more  BIB 2006»
15 years 3 months ago
Open source tools and toolkits for bioinformatics: significance, and where are we?
This review summarizes important work in open-source bioinformatics software that has occurred over the past couple of years. The survey is intended to illustrate how programs and...
Jason E. Stajich, Hilmar Lapp