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BIOINFORMATICS
2006
96views more  BIOINFORMATICS 2006»
15 years 3 months ago
Joint estimation of calibration and expression for high-density oligonucleotide arrays
Motivation: The need for normalization in microarray experiments has been well documented in the literature. Currently, most analysis methods treat normalization and analysis as a...
Ann L. Oberg, Douglas W. Mahoney, Karla V. Ballman...
BIOINFORMATICS
2005
61views more  BIOINFORMATICS 2005»
15 years 3 months ago
Identification and measurement of neighbor-dependent nucleotide substitution processes
Abstract: The presence of different neighbor dependent substitution processes generates specific patterns of dinucleotide frequencies in all organisms. Based on a general framework...
Peter F. Arndt, Terence Hwa
BIOINFORMATICS
2005
105views more  BIOINFORMATICS 2005»
15 years 3 months ago
MADE4: an R package for multivariate analysis of gene expression data
Summary: MADE4, microarray ade4, is a software package that facilitates multivariate analysis of microarray gene expression data. MADE4 accepts a wide variety of gene expression d...
Aedín C. Culhane, Jean Thioulouse, Guy Perr...
BIOINFORMATICS
2005
96views more  BIOINFORMATICS 2005»
15 years 3 months ago
BioLingua: a programmable knowledge environment for biologists
BioLingua is an interactive, web-based programming environment that enables biologists to analyze biological systems by combining knowledge and data through direct end-user progra...
J. P. Massar, Michael Travers, Jeff Elhai, Jeff Sh...
BIOINFORMATICS
2005
75views more  BIOINFORMATICS 2005»
15 years 3 months ago
DbW: automatic update of a functional family-specific multiple alignment
: Recent advances in gene sequencing have provided complete sequence information for a number of genomes and as a result the amount of data in the sequence databases is growing at ...
Veronique Prigent, Jean-Claude Thierry, Olivier Po...