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BIBM
2007
IEEE
149views Bioinformatics» more  BIBM 2007»
15 years 9 months ago
An Algorithm for Assigning Unique Keys to Metabolic Pathways
Different databases of metabolic pathways assign pathways different keys. For this reason, it is difficult to automatically compare pathways across databases. We introduce an algo...
Fang Fang, Robert L. Grossman, Xiangjun Liu
CSB
2004
IEEE
112views Bioinformatics» more  CSB 2004»
15 years 9 months ago
Inferring Genetic Networks from Microarray Data
In theory, it should be possible to infer realistic genetic networks from time series microarray data. In practice, however, network discovery has proved problematic. The three ma...
Shawn Martin, George Davidson, Elebeoba E. May, Je...
CSB
2004
IEEE
124views Bioinformatics» more  CSB 2004»
15 years 9 months ago
Multiple RNA Structure Alignment
RNA structures can be viewed as a kind of special strings with some characters bonded with each other. The question of aligning two RNA structures has been studied for a while, an...
Zhuozhi Wang, Kaizhong Zhang
DNA
2006
Springer
129views Bioinformatics» more  DNA 2006»
15 years 8 months ago
P Systems with Active Membranes Characterize PSPACE
P system is a natural computing model inspired by behavior of living cells and their membranes. We show that (semi-)uniform families of P systems with active membranes can solve i...
Petr Sosík, Alfonso Rodríguez-Pat&oa...
BIBE
2000
IEEE
15 years 8 months ago
Mining Residue Contacts in Proteins
In this paper we develop data mining techniques to predict 3D contact potentials among protein residues (or amino acids) based on the hierarchical nucleationpropagation model of p...
Mohammed Javeed Zaki, Shan Jin, Chris Bystroff