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BMCBI
2010
175views more  BMCBI 2010»
15 years 5 months ago
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services
Background: Many complementary solutions are available for the identifier mapping problem. This creates an opportunity for bioinformatics tool developers. Tools can be made to fle...
Martijn P. van Iersel, Alexander R. Pico, Thomas K...
BMCBI
2007
173views more  BMCBI 2007»
15 years 5 months ago
Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts
Background: Chromatin immunoprecipitation combined with DNA microarrays (ChIP-chip) is a high-throughput assay for DNA-protein-binding or post-translational chromatin/histone modi...
Joern Toedling, Oleg Sklyar, Tammo Krueger, Jenny ...
BIB
2006
169views more  BIB 2006»
15 years 5 months ago
Bio-ontologies: current trends and future directions
: In recent years, as a knowledge-based discipline, bioinformatics has moved to make its knowledge more computationally amenable. After its beginnings in the disciplines as a techn...
Olivier Bodenreider, Robert Stevens
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BMCBI
2006
166views more  BMCBI 2006»
15 years 5 months ago
bioNMF: a versatile tool for non-negative matrix factorization in biology
Background: In the Bioinformatics field, a great deal of interest has been given to Non-negative matrix factorization technique (NMF), due to its capability of providing new insig...
Alberto D. Pascual-Montano, Pedro Carmona-Saez, Mo...
ICDE
2008
IEEE
157views Database» more  ICDE 2008»
16 years 6 months ago
Querying and Managing Provenance through User Views in Scientific Workflows
Abstract-- Workflow systems have become increasingly popular for managing experiments where many bioinformatics tasks are chained together. Due to the large amount of data generate...
Olivier Biton, Sarah Cohen Boulakia, Susan B. Davi...