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BIOINFORMATICS
2010
84views more  BIOINFORMATICS 2010»
15 years 5 months ago
partDSA: deletion/substitution/addition algorithm for partitioning the covariate space in prediction
The partDSA package (Molinaro, Lostritto, and Weston 2009) provides a novel recursive partitioning tool for prediction when numerous variables jointly affect the outcome. In such ...
Annette M. Molinaro, Karen Lostritto, Mark J. van ...
BIOINFORMATICS
2010
139views more  BIOINFORMATICS 2010»
15 years 5 months ago
adephylo: new tools for investigating the phylogenetic signal in biological traits
Summary: adephylo is a package for the R software dedicated to the analysis of comparative evolutionary data. Phylogenetic comparative methods initially aimed at accounting for or...
Thibaut Jombart, François Balloux, St&eacut...
BIOINFORMATICS
2007
66views more  BIOINFORMATICS 2007»
15 years 5 months ago
Gene expression network analysis and applications to immunology
We address the problem of using expression data and prior biological knowledge to identify differentially expressed pathways or groups of genes. Following an idea of Ideker et al...
Serban Nacu, Rebecca Critchley-Thorne, Peter Lee, ...
BIOINFORMATICS
2007
88views more  BIOINFORMATICS 2007»
15 years 5 months ago
Maximum likelihood of phylogenetic networks
Horizontal gene transfer (HGT) is believed to be ubiquitous among bacteria, and plays a major role in their genome diversification as well as their ability to develop resistance t...
Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller
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BIOINFORMATICS
2007
76views more  BIOINFORMATICS 2007»
15 years 5 months ago
Optimization of primer design for the detection of variable genomic lesions in cancer
Primer approximation multiplex PCR (PAMP) is a new experimental protocol for efficiently assaying structural variation in genomes. PAMP is particularly suited to cancer genomes w...
Ali Bashir, Yu-Tsueng Liu, Benjamin J. Raphael, De...