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CSB
2005
IEEE
223views Bioinformatics» more  CSB 2005»
15 years 11 months ago
Automatic Protein Function Annotation through Candidate Ortholog Clusters from Incomplete Genomes
Annotation of protein function often arises in the context of partially complete genomes but is not adequately addressed. We present an annotation method by extracting ortholog cl...
Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muc...
CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
15 years 11 months ago
EigenPhenotypes: Towards an Algorithmic Framework for Phenotype Discovery
Studying the genetic control of molecular, anatomical and/or morphological phenotypes in model organisms is a powerful tool in the functional analysis of a gene. The goal of our r...
Alexander Vaughan, Rahul Singh, Ilmi Yoon, Megumi ...
CSB
2005
IEEE
136views Bioinformatics» more  CSB 2005»
15 years 11 months ago
Whole Genome Phylogeny Based on Clustered Signature String Composition
Peptide compositions constructed out of whole sets of protein sequences can be used as species signatures for phylogenetic analysis. To account for point mutations, an amino acid ...
Xiaomeng Wu, Guohui Lin, Xiu-Feng Wan, Dong Xu
ICCSA
2004
Springer
15 years 10 months ago
A Sequence-Focused Parallelisation of EMBOSS on a Cluster of Workstations
Abstract. A number of individual bioinformatics applications (particularly BLAST and other sequence searching methods) have recently been implemented over clusters of workstations ...
Karl Podesta, Martin Crane, Heather J. Ruskin
BIBE
2003
IEEE
128views Bioinformatics» more  BIBE 2003»
15 years 10 months ago
A Repulsive Clustering Algorithm for Gene Expression Data
: - Facing the development of microarray technology, clustering is currently a leading technique to gene expression data analysis. In this paper, we propose a novel algorithm calle...
Chyun-Shin Cheng, Shiuan-Sz Wang