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BIBE
2007
IEEE
126views Bioinformatics» more  BIBE 2007»
15 years 7 months ago
FPGA Acceleration of Phylogeny Reconstruction for Whole Genome Data
In this paper we describe our design and characterization of a co-processor architecture to accelerate median-based phylogenetic reconstruction for generearrangement data. Our curr...
Jason D. Bakos, Panormitis E. Elenis, Jijun Tang
COCOA
2008
Springer
15 years 7 months ago
Algorithms and Experimental Study for the Traveling Salesman Problem of Second Order
We introduce a new combinatorial optimization problem, which is a generalization of the Traveling Salesman Problem (TSP) and which we call Traveling Salesman Problem of Second Orde...
Gerold Jäger, Paul Molitor
DNA
2008
Springer
104views Bioinformatics» more  DNA 2008»
15 years 7 months ago
Self-assembly of Discrete Self-similar Fractals
In this paper, we search for theoretical limitations of the Tile Assembly Model (TAM), along with techniques to work around such limitations. Specifically, we investigate the self...
Matthew J. Patitz, Scott M. Summers
APVIS
2004
15 years 7 months ago
An Interactive Visualisation for Investigating DNA Sequence Information
1 The sequence of nucleotides that makes up a DNA molecule encodes the characteristics of living things. Bioinformatics offers sophisticated methods to search for and compare nucl...
Paul Rutherford, Clare Churcher, John McCallum
136
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ECSCW
2001
15 years 7 months ago
When worlds collide: Molecular biology as interdisciplinary collaboration
The field of molecular biology is in a remarkably rapid period of change, as the genome sequencing projects and new experimental technologies have generated an explosion of data To...
Vicki L. O'Day, Annette Adler, Allan Kuchinsky, An...