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BIBM
2010
IEEE
180views Bioinformatics» more  BIBM 2010»
15 years 3 months ago
CAMBer: An approach to support comparative analysis of multiple bacterial strains
There is a large amount of inconsistency in gene structure annotations of bacterial strains. This inconsistency is a frustrating impedance to effective comparative genomic analysi...
Michal Wozniak, Limsoon Wong, Jerzy Tiuryn
BIBM
2010
IEEE
161views Bioinformatics» more  BIBM 2010»
15 years 3 months ago
Cis-regulatory module detection using constraint programming
We propose a method for finding CRMs in a set of co-regulated genes. Each CRM consists of a set of binding sites of transcription factors. We wish to find CRMs involving the same t...
Tias Guns, Hong Sun, Kathleen Marchal, Siegfried N...
BIOCOMP
2010
15 years 3 months ago
Extraction of Protein Sequence Motifs Information by Bi-Clustering Algorithm
- The activities and function of proteins can potentially be determined by protein sequence motifs. Therefore, obtaining the universally conserved and crossed protein family bounda...
Vincent Yip, Bernard Chen, Sinan Kockara
ISBRA
2010
Springer
15 years 3 months ago
Residue Contexts: Non-sequential Protein Structure Alignment Using Structural and Biochemical Features
The study of non-sequential alignments, with different connectivity of the aligned fragments in the proteins being compared can offer a more complete picture of the structural, evo...
Jay W. Kim, Rahul Singh
BIOCOMP
2009
15 years 3 months ago
Simulating Spatial Partial Differential Equations with Cellular Automata
Abstract-- Spatial partial differential equations are commonly used to describe systems of biological entities, such as patterns created by desert vegetation and biovermiculation g...
Brian Strader, Keith E. Schubert, Ernesto Gomez, J...