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145
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SIGMOD
2005
ACM
144views Database» more  SIGMOD 2005»
16 years 3 months ago
Mining Periodic Patterns with Gap Requirement from Sequences
We study a problem of mining frequently occurring periodic patterns with a gap requirement from sequences. Given a character sequence S of length L and a pattern P of length l, we...
Minghua Zhang, Ben Kao, David Wai-Lok Cheung, Kevi...
138
Voted
SIGMOD
2004
ACM
88views Database» more  SIGMOD 2004»
16 years 3 months ago
Using Reasoning to Guide Annotation with Gene Ontology Terms in GOAT
High-quality annotation of biological data is central to bioinformatics. Annotation using terms from ontologies provides reliable computational access to data. The Gene Ontology (...
Michael Bada, Daniele Turi, Robin McEntire, Robert...
SIGMOD
2004
ACM
196views Database» more  SIGMOD 2004»
16 years 3 months ago
FARMER: Finding Interesting Rule Groups in Microarray Datasets
Microarray datasets typically contain large number of columns but small number of rows. Association rules have been proved to be useful in analyzing such datasets. However, most e...
Gao Cong, Anthony K. H. Tung, Xin Xu, Feng Pan, Ji...
133
Voted
EDBT
2004
ACM
230views Database» more  EDBT 2004»
16 years 3 months ago
Flexible Integration of Molecular-Biological Annotation Data: The GenMapper Approach
Molecular-biological annotation data is continuously being collected, curated and made accessible in numerous public data sources. Integration of this data is a major challenge in ...
Hong Hai Do, Erhard Rahm
CISIS
2010
IEEE
15 years 10 months ago
Scalability Analysis of Progressive Alignment on a Multicore
—Sequence alignment is a fundamental instrument in Bioinformatics. In recent years, numerous proposals have been addressing the problem of accelerating this class of applications...
Sebastian Isaza, Friman Sánchez, Georgi Gay...