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131
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WABI
2007
Springer
110views Bioinformatics» more  WABI 2007»
15 years 9 months ago
Haplotype Inference Via Hierarchical Genotype Parsing
The within-species genetic variation due to recombinations leads to a mosaic-like structure of DNA. This structure can be modeled, e.g. by parsing sample sequences of current DNA w...
Pasi Rastas, Esko Ukkonen
142
Voted
AINA
2006
IEEE
15 years 9 months ago
Partitioned optimization algorithms for multiple sequence alignment
Multiple sequence alignment is an important and difficult problem in molecular biology and bioinformatics. In this paper, we propose a partitioning approach that significantly impr...
Yixin Chen, Yi Pan, Juan Chen, Wei Liu, Ling Chen
140
Voted
BROADNETS
2006
IEEE
15 years 9 months ago
Transparent Optimization of Grid Server Selection With Real-Time Passive Network Measurements
Grid services have tremendously simplified the programming challenges in leveraging large-scale distributed comAt the same time, the increased level of abstraction reduces the op...
Marcia Zangrilli, Bruce Lowekamp
108
Voted
CIBCB
2006
IEEE
15 years 9 months ago
Prediction of the Number of Helices for the Twilight Zone Proteins
– Protein structure prediction is one of the core research areas in bioinformatics. This paper addresses the protein secondary structure prediction problem for the twilight zone ...
Kanaka Durga Kedarisetti, Ke Chen, Aashima Kapoor,...
FCCM
2006
IEEE
137views VLSI» more  FCCM 2006»
15 years 9 months ago
Single Pass, BLAST-Like, Approximate String Matching on FPGAs
Abstract: Approximate string matching is fundamental to bioinformatics, and has been the subject of numerous FPGA acceleration studies. We address issues with respect to FPGA imple...
Martin C. Herbordt, Josh Model, Yongfeng Gu, Bhara...