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IEEEPACT
2005
IEEE
15 years 9 months ago
Exploiting Coarse-Grained Parallelism to Accelerate Protein Motif Finding with a Network Processor
While general-purpose processors have only recently employed chip multiprocessor (CMP) architectures, network processors (NPs) have used heterogeneous multi-core architectures sin...
Ben Wun, Jeremy Buhler, Patrick Crowley
SC
2005
ACM
15 years 9 months ago
Separating Abstractions from Resources in a Tactical Storage System
ng Abstractions from Resources in a Tactical Storage System Douglas Thain† , Sander Klous∗ , Justin Wozniak† , Paul Brenner† , Aaron Striegel† , Jesus Izaguirre† † - ...
Douglas Thain, Sander Klous, Justin M. Wozniak, Pa...
127
Voted
CIKM
2005
Springer
15 years 9 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
122
Voted
CP
2005
Springer
15 years 9 months ago
CP(Graph): Introducing a Graph Computation Domain in Constraint Programming
Abstract. In an increasing number of domains such as bioinformatics, combinatorial graph problems arise. We propose a novel way to solve these problems, mainly those that can be tr...
Grégoire Dooms, Yves Deville, Pierre Dupont
137
Voted
CP
2005
Springer
15 years 9 months ago
Applying Constraint Programming to Rigid Body Protein Docking
In this paper we show how Constraint Programming (CP) techniques can improve the efficiency and applicability of grid-based algorithms for optimising surface contact between comple...
Ludwig Krippahl, Pedro Barahona