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CSB
2003
IEEE
106views Bioinformatics» more  CSB 2003»
15 years 8 months ago
Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss
As gene order evolves through a variety of chromosomal rearrangements, conserved segments provide important insight into evolutionary relationships and functional roles of genes. ...
Jun Huan, Jan Prins, Wei Wang 0010, Todd J. Vision
CSB
2003
IEEE
15 years 8 months ago
Search for Evolution-Related-Oligonucleotides and Conservative Words in rRNA Sequences
We describe a method for finding ungapped conserved words in rRNA sequences that is effective, utilizes evolutionary information and does not depend on multiple sequence alignment...
Liaofu Luo, Li-Ching Hsieh, Fengmin Ji, Mengwen Ji...
CSB
2003
IEEE
15 years 8 months ago
Group Testing With DNA Chips: Generating Designs and Decoding Experiments
DNA microarrays are a valuable tool for massively parallel DNA-DNA hybridization experiments. Currently, most applications rely on the existence of sequence-specific oligonucleot...
Alexander Schliep, David C. Torney, Sven Rahmann
CSB
2003
IEEE
15 years 8 months ago
LOGOS: a modular Bayesian model for de novo motif detection
The complexity of the global organization and internal structures of motifs in higher eukaryotic organisms raises significant challenges for motif detection techniques. To achiev...
Eric P. Xing, Wei Wu, Michael I. Jordan, Richard M...
CSB
2003
IEEE
15 years 8 months ago
An SVM-based Algorithm for Identification of Photosynthesis-specific Genome Features
This paper presents a novel algorithm for identification and functional characterization of “key” genome features responsible for a particular biochemical process of interest....
Gong-Xin Yu, George Ostrouchov, Al Geist, Nagiza F...